com.pentec.adapt
Class APlot

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  com.pentec.adapt.APanel
                      com.pentec.adapt.APlot

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

Direct Known Subclasses:

AMultiPlot

public class APlot
extends APanel

APlot extends APanel and provides the base class for all XY type data viewed by ADAPT.

Author:

Pender Technology

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

private double[]	adOverlay
protected java.awt.image.DataBufferDouble	plotDB

Fields inherited from class com.pentec.adapt.APanel

axes, color_Grid, color_Markers, color_Overlay, color_Plot, color_Trace1, color_Trace2, color_Trace3, dataFrame, dDataXMax, dDataXMin, dDataYMax, dDataYMin, dXScale, dYScale, iLRX, iLRY, imageBuffer, iScanNumber, isIntegrationEnabled, iULX, iULY, panelBounds, zl

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

APlot(DataFrame ownerFrame)

Method Summary

protected boolean	apaint(java.awt.Graphics2D graphics) Plot the data points for a single trace with optional overlay.
private void	centerAbout(double dy)
void	centerMax()
void	centerMin()
void	clearOverlay() This is overridden by APlot but not defined by AImage
void	editCopy(java.lang.String $) Edit--Copy
void	editOriginal()
void	findMinima(java.lang.String $) Tools - Find Local Minima
java.lang.String[]	getCursorInfo$(double dx, double dy)
protected double[][]	getData()
protected int	getMaxLen(double[][] aadPlot)
double[][]	getMinMaxIn() Find the max and min in the current ROI
double[][]	getMinMaxOut() Find the max and min outside of the current ROI
double[][]	getSourceData()
double	getX(int i) Get an x value
double	getY1(int i) Get a y value from the first data set
double	getY2(int i) Get a y value from the second data set
double	getY3(int i) Get a y value from the third data set
int	getZdim() Get the Z dimensionality
protected void	init(DataFrame ownerFrame) This method will be called by the super constructor when the owner frame handle is available
void	integrate()
static DataFrame	makeDataFrame(DataFrame callingFrame, java.lang.String $Text, double[][] aad, boolean doCopy) Make a new frame with a new plot, display it, and save it
static DataFrame	makeDataFrame(java.io.File newFile, double[][] aad) Make a new frame and a new plot
static DataFrame	makeDataFrame(javax.swing.JFrame parentFrame, java.lang.String $File, double[][] aad) Make a new frame and a new plot, then display it
protected void	menuFixer(AMenuBar menuBar) Disables or remove menu items that are not implemented for plots
private boolean	multiPaint(java.awt.Graphics graphics) Plot the data points for multiple traces
protected void	reSync()
private void	scaleData(double[][] xyArray)
void	scaleData(double dMin, double dMax) Set the y-axis range to a specific minimum and maximum
private void	setDataBuffer(java.awt.image.DataBuffer dbd)
void	setOverlay() This is overridden by APlot but not defined by AImage
void	setSourceData(java.util.ArrayList ax, java.util.ArrayList ay) Set the plot data buffer using 2 array lists
void	setSourceData(java.awt.image.DataBuffer dbd) Set the plot data using an input data buffer
void	setSourceData(double[][] aad) Set the plot data buffer using a 2D input array
void	setSourceData(double[][] aad, boolean doScale) Set the plot data buffer using a 2D input array
void	setSourceData(double[][] xyArray, double dXMin, double dXMax, double dYMin, double dYMax) Set the plot data buffer using a 2D input array
java.nio.channels.FileChannel	write(boolean isNative, java.lang.String $Format) Create a file and write out the header and the data.
protected java.nio.channels.FileChannel	writePng()
protected java.nio.channels.FileChannel	writeSaf()
protected java.nio.channels.FileChannel	writeTxt()
java.nio.channels.FileChannel	writeXLS()

Methods inherited from class com.pentec.adapt.APanel

addPopupMenu, autoscaleInsideExtr, autoscaleInsideZero, autoscaleOutsideExtr, autoscaleOutsideZero, boundX, boundY, centerAbout, centerMouseCursor, convertBox, drawBorder, getAoi, getMouseX, getMouseY, getScaledX, getScaledY, getSize, getXScale, getXYAdjust, getYScale, menuFixer, paint, scaleX, scaleY, scrollX, scrollY, setActive, setBounds, setIntegrationEnabled, setSize, setTraceColor, setXRange, setXYRange, setXYRange, setYRange, toString, update, zoom

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, show, show, size, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

adOverlay

private double[] adOverlay

plotDB

protected java.awt.image.DataBufferDouble plotDB

Constructor Detail

APlot

public APlot(DataFrame ownerFrame)

Method Detail

apaint

protected boolean apaint(java.awt.Graphics2D graphics)

Plot the data points for a single trace with optional overlay. The points are located using longs to preserve close zooms.

Specified by:

apaint in class APanel

centerAbout

private void centerAbout(double dy)

centerMax

public void centerMax()

Specified by:

centerMax in class APanel

centerMin

public void centerMin()

Specified by:

centerMin in class APanel

clearOverlay

public void clearOverlay()

Description copied from class: APanel

This is overridden by APlot but not defined by AImage

Overrides:

clearOverlay in class APanel

editCopy

public void editCopy(java.lang.String $)

Edit--Copy

editOriginal

public void editOriginal()

Specified by:

editOriginal in class APanel

findMinima

public void findMinima(java.lang.String $)

Tools - Find Local Minima

Specified by:

findMinima in class APanel

getCursorInfo$

public java.lang.String[] getCursorInfo$(double dx,
                                         double dy)

Specified by:

getCursorInfo$ in class APanel

getData

protected double[][] getData()

getMaxLen

protected int getMaxLen(double[][] aadPlot)

getMinMaxIn

public double[][] getMinMaxIn()

Find the max and min in the current ROI

Specified by:

getMinMaxIn in class APanel

getMinMaxOut

public double[][] getMinMaxOut()

Find the max and min outside of the current ROI

Specified by:

getMinMaxOut in class APanel

getSourceData

public double[][] getSourceData()

getX

public double getX(int i)

Get an x value

Parameters:

i - the x element to retrieve

Returns:

the value of the requested x element

getY1

public double getY1(int i)

Get a y value from the first data set

Parameters:

i - the y element to retrieve

Returns:

the value of the requested y element

getY2

public double getY2(int i)

Get a y value from the second data set

Parameters:

i - the y element to retrieve

Returns:

the value of the requested y element

getY3

public double getY3(int i)

Get a y value from the third data set

Parameters:

i - the y element to retrieve

Returns:

the value of the requested y element

getZdim

public int getZdim()

Get the Z dimensionality

init

protected void init(DataFrame ownerFrame)

This method will be called by the super constructor when the owner frame handle is available

Overrides:

init in class APanel

integrate

public void integrate()

Specified by:

integrate in class APanel

makeDataFrame

public static DataFrame makeDataFrame(DataFrame callingFrame,
                                      java.lang.String $Text,
                                      double[][] aad,
                                      boolean doCopy)

Make a new frame with a new plot, display it, and save it

Parameters:

callingFrame - the frame from which the function is called

$Text - text to be appended to form a new file name

aad - the source data

Returns:

a handle to the new frame

makeDataFrame

public static DataFrame makeDataFrame(java.io.File newFile,
                                      double[][] aad)

Make a new frame and a new plot

Parameters:

newFile - the file to associate with the new frame

aad - the source data

Returns:

a handle to the new frame

makeDataFrame

public static DataFrame makeDataFrame(javax.swing.JFrame parentFrame,
                                      java.lang.String $File,
                                      double[][] aad)

Make a new frame and a new plot, then display it

Parameters:

parentFrame - a reference frame for positioning

$File - what to name the associated data file

aad - the source data

Returns:

a handle to the new frame

menuFixer

protected void menuFixer(AMenuBar menuBar)

Disables or remove menu items that are not implemented for plots

Specified by:

menuFixer in class APanel

multiPaint

private boolean multiPaint(java.awt.Graphics graphics)

Plot the data points for multiple traces

reSync

protected void reSync()

Specified by:

reSync in class APanel

scaleData

private void scaleData(double[][] xyArray)

scaleData

public void scaleData(double dMin,
                      double dMax)

Set the y-axis range to a specific minimum and maximum

Specified by:

scaleData in class APanel

setDataBuffer

private void setDataBuffer(java.awt.image.DataBuffer dbd)

setOverlay

public void setOverlay()

Description copied from class: APanel

This is overridden by APlot but not defined by AImage

Overrides:

setOverlay in class APanel

setSourceData

public void setSourceData(java.util.ArrayList ax,
                          java.util.ArrayList ay)

Set the plot data buffer using 2 array lists

Parameters:

ax - the list of x values

ay - the list of y values

setSourceData

public void setSourceData(java.awt.image.DataBuffer dbd)

Set the plot data using an input data buffer

Specified by:

setSourceData in class APanel

Parameters:

dbd - a data buffer to use for the plot data

setSourceData

public void setSourceData(double[][] aad)

Set the plot data buffer using a 2D input array

Parameters:

aad - a 2D array to use for the plot data

setSourceData

public void setSourceData(double[][] aad,
                          boolean doScale)

Set the plot data buffer using a 2D input array

Parameters:

aad - a 2D array to use for the plot data

doScale - if true, rescale the plot to the input array extrema

setSourceData

public void setSourceData(double[][] xyArray,
                          double dXMin,
                          double dXMax,
                          double dYMin,
                          double dYMax)

Set the plot data buffer using a 2D input array

Parameters:

xyArray - the 2D array to use in creating a data buffer for this plot

dXMin - the initial minimum x-axis value

dXMax - the initial maximum x-axis value

dYMin - the initial minimum y-axis value

dYMax - the initial maximum y-axis value

write

public java.nio.channels.FileChannel write(boolean isNative,
                                           java.lang.String $Format)

Create a file and write out the header and the data. All output is done with big endian byte ordering.

Specified by:

write in class APanel

writePng

protected java.nio.channels.FileChannel writePng()
                                          throws java.lang.Exception

Throws:

java.lang.Exception

writeSaf

protected java.nio.channels.FileChannel writeSaf()
                                          throws java.lang.Exception

Throws:

java.lang.Exception

writeTxt

protected java.nio.channels.FileChannel writeTxt()
                                          throws java.lang.Exception

Throws:

java.lang.Exception

writeXLS

public java.nio.channels.FileChannel writeXLS()
                                       throws java.lang.Exception

Throws:

java.lang.Exception